with graphics processing units (GPUs).
** gem.pmemd (AmberTools) handles the extra parameters in the polarizable AMOEBA force field and GEM force field.
* nmode calculates normal modes.
* NAB is a built-in nucleic acid building environment made to aid in the process of manipulating proteins and nucleic acids where an atomic level of description will aid computing.

AmberTools

AmberTools is a collection of tools that work well with AMBER as well as each other. It

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