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open-source||||-| Gabedit| XRD MM| open-source| C|||-| Jmol|| open-source| Java (applet or standalone program)
Transpiled HTML5/JavaScript for browser|| Supports advanced capabilities such as loading multiple molecules with independent movement, surfaces and molecular orbitals, cavity visualization, crystal symmetry|-| MDL Chime|| , free use noncommercial| C++ browser plugin for Windows only|| Build and visualize molecule and periodic systems (crystal, structures, fluids...), animate trajectories, visualize molecular orbitals, density, electrostatic potential... visualize graph such IR, NMR, dielectric and optical tensors.|-| Molden| MM XRD| , free use academic||||-| Molecular Operating Environment (MOE)| HM MD MM NA QM SMI XRD| | Windows, Linux, OS X; SVL programming language|| Build, edit and visualise small molecules, macromolecules, protein-ligand complexes, crystal lattices, molecular and property surfaces. Platform for extensive collection of molecular modelling / drug discovery applications.|-| Molekel| MM XRD| open-source| Java 3D applet or standalone program|||-|Mol* (Molstar)|| open-source|Web-based; uses WebGL and TypeScript||Integrated into RCSB and PDBe websites|- | PyMOL| MM XRD SMI EM| Open-source| Python|| |-| RasMol|| open-source| C standalone program|||-| SAMSON| MM MD SMI MRI | , limited free version| Windows, Linux, Mac. C++ (Qt)| | Computational nanoscience: life sciences, materials, etc. Modular architecture, modules termed SAMSON Elements.|-| Sirius|| open-source| Java 3D applet or standalone program|| No longer supported as of 2011.|-| Scigress| MM QM| | Standalone program|| Edit, visualize and run simulations on various molecular systems.|-| Spartan| MM QM| | Standalone program|| Visualize and edit biomolecules, extract bound ligands from PDB files for further computational analysis, full molecular mechanics and quantum chemical calculations package with streamlined graphical user interface.

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