contemporary reference to a Mughal garrison at Gorakhpur is in 1572, when it was governed by Payanda Khan on behalf of Munim Khan, then subahdar of Jaunpur. Gorakhpur was for a long time the main Muslim garrison north of the Ghaghra, which may explain why it has such a prominent Muslim presence compared to other parts of the district.

In the Ain-i-Akbari ( 1595), Gorakhpur is listed